PTRStalkerDB - Database of tandem repeats in proteins

PTRStalkerDB is a database containing all the fuzzy tandem repeats found in UniProtKB/Swiss-Prot using PTRStalker, an algorithm developed by our group including a tool which simultaneously queries multiple on line publicly available tools for finding exact and approximate tandem repeats.
The version of UniProtKB/Swiss-Prot analyzed is the release 57.15 of 02 March 2010 that contains 515,203 sequence entries.
Ab initio detection of fuzzy amino acid tandem repeats in protein sequences
Marco Pellegrini, M. Elena Renda, Alessio Vecchio
BMC Bioinformatics 2012, Vol. 13(Suppl 3):S8, March 2012.

Detecting Fuzzy Amino Acid Tandem Repeats in Protein Sequences
Marco Pellegrini, M. Elena Renda, Alessio Vecchio
ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM BCB), Chicago, USA. August 2011.


Enter PTRStalkerDB

Styled and mantained by:
M. Elena Renda