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PTRStalkerDB - Database of tandem repeats in proteins
PTRStalkerDB is a database containing all the fuzzy tandem repeats found in UniProtKB/Swiss-Prot using PTRStalker, an algorithm developed by our group including a tool which simultaneously queries multiple on line publicly available tools for finding exact and approximate tandem repeats.
The version of UniProtKB/Swiss-Prot analyzed is the release 57.15 of 02 March 2010 that contains 515,203 sequence entries.
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References:
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Ab initio detection of fuzzy amino acid tandem repeats in protein sequences
Marco Pellegrini, M. Elena Renda, Alessio Vecchio
BMC Bioinformatics 2012, Vol. 13(Suppl 3):S8, March 2012.
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Detecting Fuzzy Amino Acid Tandem Repeats in Protein Sequences
Marco Pellegrini, M. Elena Renda, Alessio Vecchio
ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM BCB), Chicago, USA. August 2011.
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Styled and mantained by:
M. Elena Renda
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